Author: Nana Bit-Avragim

In:  Other  

The catalyst for open clinical trials is the patient – Interview with Dr. Anula Jayasuriya

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Every year in May, I attend the Charité Entrepreneurship Summit, a unique event for international medical entrepreneurs and life science innovators organized by the Charité Foundation in Berlin. This ‘think-tank’ meeting connects sparkling ideas with pragmatic reality and facilitates a ‘one-of-a-kind’ scene for ‘let’s innovate and implement’ biomedical professionals and entrepreneurs from all over the world. This year, I had a special opportunity to meet and conduct an interview with Dr. Anula Jayasuriya, a wonderful personality and a talented scientist, physician, and investor. While contacting and talking with Anula Jayasuriya, I realized that she represents an amazing role model for every young scientist-entrepreneur. Here is some of food for thought from our conversation on entrepreneurship in medical sciences and open science.

Q1: The NIH has been one of the biggest forces behind the push towards increasing access to scientific information, but we are just at the beginning of the open science movement – open data being the next big hurdle. Do you see potential for an impact on the US health care system?

AJ: I think the NIH initiatives are very exciting, and open data will make a huge difference in the whole US health care system – but it will take time. At the end of the day, the NIH doesn’t make drugs, right? So we have to contend with industry. I wonder how it’s going to play out for pharma and biotech? Their business model is centered on protecting their innovations with IP and making money from products during the exclusivity period.

The moral imperative to share drug development data is that such information would greatly benefit patients and society. Let’s speculate that three big pharma companies working on development of the same category of drugs in their pipelines would be willing to share their failure results. This would be very important in preventing adverse reactions and health-related complications in patients. Perhaps these companies could form an industry consortium where every company was required to share their drug development failure data. There are many hurdles to be overcome before this can be a reality. For example, the first to fail is likely to benefit others but not itself. Money saved by averting future failures maybe eclipsed by lost revenues and compromised IP,  etc. Pharma has to see an economic incentive to share data. Perhaps there could be an attractive market for acquiring failure information? In any case, there would need to be a dramatic transformation and innovation around the existing IP-based “winner-take-all” industry business model.

Pharma has to see an economic incentive to share data

Q2: Do you believe that patient access to the clinical trial data and mandated data sharing will create a climate that could accelerate drug development and translational science research?

AJ: I believe that the biggest motivator and catalyst in this process of sharing clinical trial information will be the patient. We are entering a very exciting era of patient engagement. Going forward, I see patients playing active roles in clinical trials. As patient participation is essential to clinical drug development patients have the power to make the change. The passive patient is likely to become a memory of the past. Already today there is a US Government funded institute called PCORI (Patient Centered Outcomes Research Institute) that is making grants to investigators who engage patients in clinical trial design. I see patients challenging Pharma, Biotech and Regulators to adapt to a world where patients are active decision makers alongside industry and regulators. The FDA today is caught in the middle of a rapidly transforming ethos. All stakeholders will need to adapt to a new equilibrium. Let me give you some examples. In 1993, I was working for Roche pharmaceuticals. This was during the early days of the HIV outbreak where there was an urgent need to develop new drugs to fight the devastating epidemic. Patient advocacy groups had a huge impact on getting pharma companies to work together and also influenced the FDA to act quickly and really make a difference (read more about Act Up). I saw first-hand how powerful the cooperative approach was. By the way, physicians were very pleased to see collaborations, which led to effective treatment and greatly benefited patients. But that was one narrow case in the past.

Today, I see changes taking place across several diseases, especially in fighting cancer and rare diseases. Patients, together with their families, are building tight communities to share and disseminate knowledge about their diseases. In the USA, there is a popular movement called “hacking your body”. This is a different kind of open innovation – the innovations are ones that have been “opened”/discovered by patients. The drive is coming from patients and their families. Now, patients are playing active roles, often going around regulatory barriers and industry specifications and advocating for themselves.  As a physician, I am immensely pleased to see engaged patients. There are likely to be some hiccups and missteps along the way but I think that in the long run it will lead to accelerated drug development and, most importantly, better patient outcomes.

I believe that the biggest motivator and catalyst in this process of sharing clinical trial information will be the patient… This is a different kind of open innovation – the innovations are ones that have been “opened”/discovered by patients.

In the US, patients are entitled to free access to their medical records. If patients who participated in clinical trials were also entitled to access to their clinical trial records and were able to communicate with co-participants in the same trial I think they could “hack” the trial, by comparing adverse events and outcomes. And they are likely to share these aggregated data openly even if industry does not. I see patients, their families and society as the key actors in improving their health care.

There are two important ways to improve and accelerate drug development: understanding the science behind drug failures, and developing a process of sharing information openly within trial participant and disease the communities through the internet.

It is very encouraging that the NCI (the National Cancer Institute (NCI), part of the US National Institutes of Health) has successfully mediated a unique public-private partnership called the lung map trial, a multi-pharma collaboration in lung cancer. Five pharmaceutical companies (Amgen, Genentech, Pfizer, AstraZeneca, and AstraZeneca’s global biologics R&D arm, MedImmune) and Foundation Medicine (a cancer tumor genome analytics company) will collaborate to provide the treatment that is best suited to the individual patient – delivering personalized care.  Patients need to enroll only in a single trial to access drugs developed by five different pharma companies. This is a groundbreaking development – real progress.

In addition, there are many digital health start-up companies whose business models are based on selling anonymized clinical trial data. (Of course, there are several ethical, privacy and compliance considerations to be addressed, but let’s just put them aside for now.) The promise of “Big Data Analytics” as it applies to health care is that the aggregation of these data will lead to better outcome for patients. I am optimistic!

There are two important ways to improve and accelerate drug development: understanding the science behind drug failures, and developing a process of sharing information openly within trial participant and disease the communities through the internet.

(Read more here: Big data analytics in healthcare: promise and potential; Making Big Data Work: The Promise and Potential to …)

Q3: Do you think that big data, open science, and a worldwide network could in the future precisely tailor therapies to each patient’s individual requirement?

AJ: Precision medicine is the holy grail of health care. Tailoring cancer therapies makes a big difference in treatment outcomes today – cancer is the “low hanging fruit” due to easy access to the genomic analyses of tumors. Ultimately, delivering precision medicine relies on aggregating and analyzing data on a large number of areas: genomics, metabolomics, RNA, proteomics, behavior, environmental exposures, social and cultural milieus, etc. – this is a VERY big data play. I think the delivery of precision medicine will happen incrementally, in stages – with ever increasing degrees of precision as our understanding of the various contributing areas increase. Open science and data sharing are essential to generating the best data inputs from a multitude of sources to create a big data repository that serves as the basis for analytics.

Open innovation enables us to create products from a platform (repository) of information, which is freely available to everybody. For instance, having unrestricted access to scientific literature enables a company to develop their own algorithms for novel prognostic and diagnostic genomic screens – they could, for example, figure out which patients are sensitive/resistant to various drugs. Algorithms “learn” — the more patient data tested, the more an algorithm is refined and hence clinically informative. If, however, a company develops a screening or diagnostic test and patents it, thus excluding its use by others, it is no longer “open”.

The case of Myriad Genetics Inc. is interesting. They recently lost a lawsuit contesting the exclusivity of their BRCA test for breast cancer. The company used patient sequence information to develop and patent their screening test. Myriad claimed that they had exclusive rights to patients’ sequence information and to the test they derived from it. For several years Myriad was able to build a very profitable business by excluding others from duplicating their test, even though the actual sequence information the company used belonged to patients (–Everybody-Wins/). Myriad’s claims were overturned and patent law is the US changed such that naturally occurring sequences can no longer be patented. I am in favor of this outcome as it greatly benefits patients who can now access BRACA tests from several companies at a much lower price.

I am excited about the concept of open innovation because it is a major step toward improving patient care. That being said, in a capitalist society, this has to be tempered by providing sufficient incentives to industry (on whom we are dependent unless we innovate a new model) to produce drugs, diagnostics, etc. I am confident that the “new normal” will result in better health care for society and the ability of industry to adapt and innovate novel and more productive business models.

I thank Dr. Anula Jayasuriya for the fascinating insights into the world of drug discovery and the role open innovation can play.

In:  Other  

How to turn an idea into reality? An interview with Dr. Raphael Hofstein, President and CEO of MaRS Innovation

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Across the street from the venerable University of Toronto, at the intersection of College Street and Elizabeth Street in downtown Toronto, you will find the heart of Toronto’s commercialization activity across the sciences: MaRS Innovation.

If you share the values of Marc Andreessen, the American entrepreneur, investor and software developer who revolutionized a very small part of San Francisco to become the world famous Silicon Valley, you will appreciate learning about the contemporary Canadian version of biomedical Silicon Valley. MaRS Innovation was founded in 2008 and began operations in 2009 to turn Toronto’s leading research and sciences into successful start-up companies and license deals.

I really love this part of Toronto. I used to tackle my research on zebrafish heart development on the 11th floor of the MaRS building’s East Tower (MaRS Innovation’s offices occupy part of the 4th floor on the West Tower). So, I am no stranger to Toronto’s life sciences scene. But the story of how MaRS Innovation landed in Toronto and found its home is worth sharing.

Prior to the 8th Charité Entrepreneurship summit in Berlin, Germany, I spoke to Dr. Raphael Hofstein, president and CEO of MaRS Innovation about his vision for open access and open innovation models. Here is what he had to say.

Q1: What is MaRS Innovation: an innovation hub, a medical and health care technology accelerator/incubator or all of that together?

RH: We are the outcome of the Government of Canada’s fairly tenacious campaign to close the gap between Canada’s highly-qualified scientific research and its commercialization success. So, we really try to help start-ups bridge the “valley of death” and we do that in a very distinct way. Particularly, every new exciting research idea coming out of the 15 institutions in and around the Toronto area is disclosed to MaRS Innovation. As the agency of these 15 member institutions, we have to select the ideas with the best chances of successful commercialization in the shortest possible time. That is essentially what MaRS Innovation is: a research and innovation pipeline.

Every year, scientific organizations disclose between two and 15 intended projects; we select approximately 15 per cent of what we see. Since 2009, we have seen about 1500 ideas, which we successfully converted under our management into over 100 technologies. Some of them turned into start-up companies, or options/licenses to a third-party or private sector entity. Other inventions are blended or packaged together and to be more appealing to the market.


Source: MaRS Innovation One Pager May 2015

Q2: How do you see a role of open access and open innovation processes in life sciences?

RH: To highlight open innovation models in life sciences, I would like to emphasize that there are different understandings of this process. So, I need to specify an invisible margin where life sciences research should be open, and where interaction with business should not be transparent. Personally, I am for open access and open data sharing, which should benefit scientists, medical doctors, and entrepreneurs, especially at the initial stage of discovery. Later on, the research becomes industry-driven and requires a proper investment from the private sector, including big pharma and life sciences industry. Let me give you one most recent example.

Due to a successful partnership with Quebec-based Consortium for Drug Discovery (CQDM), MaRS Innovation founded a company named Encycle Therapeutics, a University of Toronto biotechnology start-up. Interestingly, being a start-up venture, Encycle has two sub-divisions. One addresses the basic essence of all CQDM activities and represents an open innovation part; using the chemistry of peptides to develop an approach to synthesizing small, drug-like macrocycles. Encycle is creating a library of cyclic peptides, called nacellins, which are small macrocycles or cyclic peptidomimetics. This library is completely open and freely available to every pharma outlet who is interested in testing or developing orally bioavailable modulators of proteins, including small-cell permeable systems. That approach fits well positioned into a concept of open access. The other Encycle subdivision is commercially focused and working with industry partners to create proprietary technologies.

Another example is the adoption of embryonic stem cell lines for medical repair. Such cell lines should serve as a foundation for the further development of cell-based technologies and the public should have free access to it. As soon as it concerns further derivation and differentiation of stem cell lines for specific medical indications, it becomes part of proprietary ownership to the developer/investor since it requires a substantial investment into research and development. That part should be closed for public use.

As we can see, a major issue of open innovation remains on where we have to draw a borderline between the public and private use. In terms of the drug discovery process, I believe it could be at phase 1 stage of clinical development.

In Toronto, we have a very strong advocate of open access and open innovation, Dr. Aled Edwards. Aled Edwards leads the Structural Genomics Consortium (SGC), a private-public open collaborative network of researchers from the University of Toronto, the University of Oxford, UK and the State University of Campinas (Unicamp) in Brazil working together with nine global pharmaceutical companies and several research funding agencies. This is a unique, first open science international institution that offers completely free access and use of research results focused on unrestricted drug discoveries. I think it is a great example of open innovation in practice. However, in later stages, clinical development requires appropriate investments and, in reality, cannot be supported through open access. Therefore, I see managing this process as the technologies develop as quite challenging in its practical realities.

Q3: Do you think that big data, open science, and a worldwide network could in the future precisely tailor therapies to each patient’s individual requirements?

RH: I am a big proponent of big data. I think an open innovation model in big data science may play a greater role. At MaRS Innovation, we engage with IBM and several venture capital groups working on harnessing big data for medical purposes. Also, pharma companies expressed strong interest in having access to medical records which represent a high-value ‘big data treasure’ within our member institutions. However up to now, it has not been easy to fulfil our dreams of turning big data into a big practical opportunity. It is obviously a work in progress! Finally, it is my expectation that mining through big data collections of patient medical records (contingent on strict patient privacy!) will significantly accelerate the development of precision medicine (aka personal medicine). The global medical community should be prepared to address the trend.

With the current system in flux, quality remains the highest priority: Interview with Editorial Board Member Johannes Boltze on Scientific Publishing


Johannes Boltze is an illustrious member of our Editorial Board. A translational scientist with a research focus on development of diagnostic and therapeutic approaches for cerebrovascular ischemia, Dr. Boltze earned his MD in 2008 and Ph.D. degree in 2012 in Neurobiology at the University of Leipzig, Germany. Since 2010, Dr. Boltze has been leading the Department of Cell Therapy at Fraunhofer* Institute for Cell Therapy and Immunology in Leipzig. Johannes Boltze is a member of Loop, Frontiers Research Network and an Associate Faculty Member at F1000 Prime. He also worked at the Stroke and Neurovascular Regulation Laboratory led by Professor Michael A. Moskowitz at the Massachusetts General Hospital and Harvard Medical School in Boston, USA from October 2012 to October 2013.

This interview was conducted by Nana Bit-Avragim, Editor and Open Access Outreach Manager at ScienceOpen.

In October 2014, I attended 15th Fraunhofer Life Science Annual Meeting in Leipzig where I met many inspiring international colleagues, translational scientists, working on emerging technologies in stem cell research and regenerative medicine. The meeting took place at the Fraunhofer Institute for Cell Therapy and Immunology (Fraunhofer IZI), a beautiful masterpiece of eco design. There I met Johannes Boltze and conducted a short interview on Open Access and the current state of scientific publishing. Here is the essence of our conversation, which I would like to see as an invitation for the ongoing open discussion.

Q. The current academic publishing system is in the midst of big changes. There are many concerns about the present publishing models as science essentially depends on communication of its results. The internet, emerging digital technologies, social networks and a need to get faster and free access to knowledge are transforming the global scientific community. Tell us a little bit about your interest in Open Access and your opinion on the current state of affairs in scientific publishing.

A. Open Access stands for full availability and unrestricted usability. This is an important point for scientific publications since it makes research output immediately and ultimately available. This helps to increase the visibility of your particular research and fosters scientific discussion.

Immediate access, however, also raises a number of critical points, especially in cases in which results are already publicly available before the review process has been completed. For instance, a biomedical research paper that still has some flaws or is not well thought out, will probably receive a numerous suggestions and comments on what one could do better. While such constructive feedback is valuable in principle, repeatedly publishing incomplete (or even untrusted) results will impact the author’s personal reputation. From the perspective of the journal, quality of individual contributions is something to consider. While Open Access and immediate publication is a good idea per se, the journal will probably wish to find ways by which the quality of individual contributions is guaranteed. This is the only way to stay competitive, given the sheer numbers of newly launched journals penetrating the scientific publication market. It also helps to receive good citation rates.

Another issue comes with the evaluation of research. I think that the Impact Factor is more important in the biomedical field than it is in other fields. For instance, in the field of physics, research results become publicly available first by posting them in arXiv in most cases. Publication in one of the “conventional” journals is a secondary option and a considerable part of the scientific exchange takes part via the arXiv.

Next to the Impact Factor, other “sciencometric” measures such as the H Factor have become established. While all come with certain advantages and disadvantages, such measures are in people’s mind and ultimately contribute to the value of a publication. I think this is something Open Access journals have to face and adapt to. Potentially, the number of citations an individual publication receives is more important than the overall impact factor of the hosting journal since citations rates indicate how well an individual publication is received by the scientific community.

Q: Do you think more transparency and free exchange of data could support academic freedom and foster a new scientific culture?

 A. I think it clearly could. If it comes to the free exchange of data – of course – we have to consider things like intellectual property, responsible use of data, and other aspects all of which are hard to decide about from a general perspective. Nevertheless, I think that the complete exchange of data is very important. You often have conventional papers in which you have some results being presented, but it is hard at times to reconstruct how those have been generated in detail.

Giving the scientific community access to raw data sets and the complete spectrum of methodological protocols would really enhance transparency.

Scientific peers could try to reproduce the results to verify them or to identify potential room for improvement. I think this may accelerate the acquisition of knowledge, particularly in translational research areas. Moreover, it would also help to swiftly spread important information and breakthrough news throughout the community to implement it much faster.

I think most of my colleagues, especially at the Fraunhofer society, are very supportive of Open Access journals and Open Access approaches, as long as the quality is assured.

Q: How to steer an academic career? What would be your advice for early career researchers to navigate the science publishing landscape in the age of Open Science and Open Access.

A. I think the key point is to present high-quality work. For young scientists, it’s really important to publish with a good Impact Factor and to have a strong publication track record as this is the current mind set in most fields. Nevertheless, Open Access journals are coming into the field in increasing numbers, with many featuring high quality standards. So, I think Open Access provides you with an option to communicate your results earlier and with higher visibility. But aside from that, I think you still have to be aware of the “conventional” standards for measuring the impact of a particular publication. Finding a way of combining both would be of significant value to biomedical science.

One should also keep in mind that science originally developed by the falsification of hypotheses – and only the best hypotheses could survive the approach. Nowadays, scientific results are mainly presented as success stories, presenting positive results and approved hypotheses. That produces a certain pressure to have such results, and fosters the neglect of neutral or negative results.

An Open Access environment may be a very valuable database for such results which are often rejected by more conventional journals, but nevertheless are invaluable for the thorough progress in a given field.

Also, ScienceOpen could be used for publishing not only original results, but also well-thought out theories, suggestions, and hypotheses.

So, having a forum where you could present your ideas and concepts to a broad range of colleagues and a wide spectrum of experts would probably help to develop them further, and would represent a gain of knowledge apart from publishing original results.

* The Fraunhofer Society is Europe’s largest applied science organization, includes more than 60 research institutes in Germany and a large number of centres and representative offices in the USA, Asia and the Middle East with more than 23k employees (scientists and engineers), and an annual research budget of more than two billion Euro.

The Leipzig-based Fraunhofer IZI is a part of the Fraunhofer Life Science Branch working on development of novel diagnostic and therapeutic technologies for oncology, autoimmune and inflammatory diseases as well as regenerative medicine approaches for a broad variety of diseases.